Signal recognition particle RNA

Signal Recognition Particle RNA (SRP RNA) is a critical component of the Signal Recognition Particle (SRP), a ribonucleoprotein complex that plays a vital role in the targeting of proteins to the endoplasmic reticulum (ER) membrane for secretion or membrane integration. SRP RNA, along with SRP proteins, forms the SRP complex that recognizes and binds to signal sequences of newly synthesized polypeptides emerging from the ribosome. This interaction halts translation temporarily and directs the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SRP receptor.

Structure and Function

SRP RNA is characterized by its unique structure, which is essential for its function in the SRP pathway. The RNA component of SRP is highly conserved across all kingdoms of life, indicating its fundamental role in cellular physiology. In eukaryotes, the SRP RNA is approximately 300 nucleotides long and forms a specific secondary structure that is crucial for its interaction with SRP proteins. This structure includes several helices and loops that provide binding sites for the six different proteins (SRP9, SRP14, SRP19, SRP54, SRP68, and SRP72) that make up the eukaryotic SRP.

The primary function of SRP RNA is to mediate the interaction between the SRP proteins, thereby facilitating the correct folding and assembly of the SRP complex. Additionally, SRP RNA plays a direct role in the recognition of the signal sequence of nascent polypeptides and the regulation of their translation. By binding to the signal sequence, SRP RNA helps to ensure that proteins destined for the secretory pathway are properly targeted to the ER membrane.

Biogenesis and Evolution

The biogenesis of SRP RNA involves its transcription from nuclear DNA, followed by processing and assembly with SRP proteins to form the mature SRP complex. The evolutionary conservation of SRP RNA suggests that it is derived from an ancient RNA molecule that played a similar role in protein targeting in the last universal common ancestor (LUCA) of all life.

Clinical Significance

Mutations or dysregulation of SRP RNA and the SRP pathway can lead to diseases related to protein misfolding and mistargeting. For example, defects in the SRP pathway have been implicated in certain forms of pre-ribosomal diseases and neurodegenerative disorders. Understanding the molecular details of SRP RNA function and its interaction with SRP proteins could provide insights into the development of therapeutic strategies for these conditions.

See Also

• Endoplasmic reticulum
• Protein targeting
• Ribonucleoprotein
• Signal sequence

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• HomosapiSRPRNA-2d.png

  Homo sapiens SRP RNA 2D structure

• SRPFunction2.png

  SRP Function

• SRPRNANomenclature.png

  SRP RNA Nomenclature

• EschcoliSRPRNA-2d.png

  Escherichia coli SRP RNA 2D structure

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  Bacillus subtilis SRP RNA 2D structure

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  Archaeoglobus fulgidus SRP RNA 2D structure

• TrypbrucSRPRNA-2d.png

  Trypanosoma brucei SRP RNA 2D structure

• SacccereSRPRNA-2d.png

  Saccharomyces cerevisiae SRP RNA 2D structure

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  PDB 1LNG EBI

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  PDB 1MFQ EBI